Contents

Medical datasets.

Section Badge:

Medical

Dataset Count:

16

Brain Dataset

Downloads ImageData 3D Volume Medical

download_brain()

Download brain dataset.

../../../_images/pyvista-examples-downloads-download_brain-1_00_00.png

Dataset Info

Data Type

ImageData

Cell Type

VOXEL

N Cells

6 998 400

N Points

7 109 137

Length

3.34e+02

Dimensions

181, 217, 181

Spacing

1.0, 1.0, 1.0

N Arrays

1

File Info

File Size

7.1 MB

Num Files

1

File Ext

.vtk

Reader

VTKDataSetReader

See also Brain Atlas With Sides Dataset

Data Source

brain.vtk

Brain Atlas With Sides Dataset

Downloads ImageData 3D Volume Medical

download_brain_atlas_with_sides()

Download an image of an averaged brain with a right-left label.

../../../_images/pyvista-examples-downloads-download_brain_atlas_with_sides-1_00_00.png

Dataset Info

Data Type

ImageData

Cell Type

VOXEL

N Cells

874 800

N Points

902 629

Length

3.34e+02

Dimensions

91, 109, 91

Spacing

2.0, 2.0, 2.0

N Arrays

1

File Info

File Size

531.1 KB

Num Files

1

File Ext

.nii.gz

Reader

NIFTIReader

See also Brain Dataset

Data Source

avg152T1_RL_nifti.nii.gz

Carotid Dataset

Downloads ImageData 3D Volume Medical

download_carotid()

Download carotid dataset.

../../../_images/pyvista-examples-downloads-download_carotid-1_00_00.png

Dataset Info

Data Type

ImageData

Cell Type

VOXEL

N Cells

158 400

N Points

167 580

Length

9.93e+01

Dimensions

76, 49, 45

Spacing

1.0, 1.0, 1.0

N Arrays

2

File Info

File Size

2.7 MB

Num Files

1

File Ext

.vtk

Reader

VTKDataSetReader

Data Source

carotid.vtk

Chest Dataset

Downloads ImageData 3D Volume Medical

download_chest()

Download chest dataset.

../../../_images/pyvista-examples-downloads-download_chest-1_00_00.png

Dataset Info

Data Type

ImageData

Cell Type

VOXEL

N Cells

4 700 178

N Points

4 980 736

Length

3.39e+02

Dimensions

512, 512, 19

Spacing

4.69e-01, 4.69e-01, 5.00e-01

N Arrays

1

File Info

File Size

6.1 MB

Num Files

1

File Ext

.mha

Reader

MetaImageReader

See also Volume Rendering

Data Source

MetaIO/ChestCT-SHORT.mha

Dicom Stack Dataset

Downloads ImageData 3D Volume Medical

download_dicom_stack()

Download TCIA DICOM stack volume.

../../../_images/pyvista-examples-downloads-download_dicom_stack-1_00_00.png

Dataset Info

Data Type

ImageData

Cell Type

VOXEL

N Cells

522 242

N Points

786 432

Length

7.06e+02

Dimensions

512, 512, 3

Spacing

9.77e-01, 9.77e-01, 1.20e+01

N Arrays

1

File Info

File Size

1.6 MB

Num Files

3

File Ext

.dcm

Reader

DICOMReader

Data Source

DICOM_Stack/data.zip

Embryo Dataset

Downloads ImageData 3D Volume Medical

download_embryo()

Download a volume of an embryo.

../../../_images/pyvista-examples-downloads-download_embryo-1_00_00.png

Dataset Info

Data Type

ImageData

Cell Type

VOXEL

N Cells

16 581 375

N Points

16 777 216

Length

4.42e+02

Dimensions

256, 256, 256

Spacing

1.0, 1.0, 1.0

N Arrays

1

File Info

File Size

3.9 MB

Num Files

1

File Ext

.slc

Reader

SLCReader

Data Source

embryo.slc

Foot Bones Dataset

Downloads PolyData Surface Mesh Medical

download_foot_bones()

Download foot bones dataset.

../../../_images/pyvista-examples-downloads-download_foot_bones-1_00_00.png

Dataset Info

Data Type

PolyData

Cell Type

TRIANGLE

N Cells

4 204

N Points

2 154

Length

1.26e+01

N Arrays

0

File Info

File Size

135.9 KB

Num Files

1

File Ext

.ply

Reader

PLYReader

See also Voxelize a Surface Mesh

Data Source

fsu/footbones.ply

Frog Dataset

Downloads ImageData 3D Volume Medical

download_frog()

Download frog dataset.

../../../_images/pyvista-examples-downloads-download_frog-1_00_00.png

Dataset Info

Data Type

ImageData

Cell Type

VOXEL

N Cells

31 594 185

N Points

31 960 000

Length

7.14e+02

Dimensions

500, 470, 136

Spacing

1.0, 1.0, 1.5

N Arrays

1

File Info

File Size

5.2 MB

Num Files

2

File Ext

.mhd,

.zraw

Reader

MetaImageReader

See also Frog Tissue Dataset, Volume Rendering

Data Source

froggy/frog.mhd froggy/frog.zraw

Frog Tissues Dataset

Built-in ImageData 3D Volume Medical

load_frog_tissues()

Load frog tissues dataset.

../../../_images/pyvista-examples-examples-load_frog_tissues-1_00_00.png

Dataset Info

Data Type

ImageData

Cell Type

VOXEL

N Cells

31 594 185

N Points

31 960 000

Length

7.14e+02

Dimensions

500, 470, 136

Spacing

1.0, 1.0, 1.5

N Arrays

1

File Info

File Size

380.4 KB

Num Files

1

File Ext

.vti

Reader

XMLImageDataReader

See also Frog Dataset

Data Source

frog_tissues.vti

Head Dataset

Downloads ImageData 3D Volume Medical

download_head()

Download head dataset.

../../../_images/pyvista-examples-downloads-download_head-1_00_00.png

Dataset Info

Data Type

ImageData

Cell Type

VOXEL

N Cells

117 547

N Points

124 992

Length

3.49e+02

Dimensions

48, 62, 42

Spacing

4.0, 4.0, 4.0

N Arrays

1

File Info

File Size

125.2 KB

Num Files

2

File Ext

.mhd,

.raw

Reader

MetaImageReader

See also Head 2 Dataset, Volume Rendering

Data Source

HeadMRVolume.mhd HeadMRVolume.raw

Head 2 Dataset

Downloads ImageData 3D Volume Medical

download_head_2()

Download head dataset.

../../../_images/pyvista-examples-downloads-download_head_2-1_00_00.png

Dataset Info

Data Type

ImageData

Cell Type

VOXEL

N Cells

6 047 325

N Points

6 160 384

Length

4.06e+02

Dimensions

256, 256, 94

Spacing

1.0, 1.0, 2.0

N Arrays

1

File Info

File Size

8.8 MB

Num Files

1

File Ext

.vti

Reader

XMLImageDataReader

See also Head Dataset

Data Source

head.vti

Knee Dataset

Downloads ImageData 2D Image Medical

download_knee()

Download knee dataset.

../../../_images/pyvista-examples-downloads-download_knee-1_00_00.png

Dataset Info

Data Type

ImageData

Cell Type

PIXEL

N Cells

261 121

N Points

262 144

Length

3.11e+02

Dimensions

512, 512, 1

Spacing

4.30e-01, 4.30e-01, 8.00e-01

N Arrays

1

File Info

File Size

526.7 KB

Num Files

1

File Ext

.dcm

Reader

DICOMReader

See also Knee Full Dataset

Data Source

DICOM_KNEE.dcm

Knee Full Dataset

Downloads ImageData 3D Volume Medical

download_knee_full()

Download full knee dataset.

../../../_images/pyvista-examples-downloads-download_knee_full-1_00_00.png

Dataset Info

Data Type

ImageData

Cell Type

VOXEL

N Cells

10 225 800

N Points

10 368 384

Length

3.07e+02

Dimensions

208, 248, 201

Spacing

7.23e-01, 7.23e-01, 1.00e+00

N Arrays

1

File Info

File Size

9.0 MB

Num Files

1

File Ext

.slc

Reader

SLCReader

See also Knee Dataset

Data Source

vw_knee.slc

Prostate Dataset

Downloads ImageData 2D Image Medical

download_prostate()

Download prostate dataset.

../../../_images/pyvista-examples-downloads-download_prostate-1_00_00.png

Dataset Info

Data Type

ImageData

Cell Type

PIXEL

N Cells

261 121

N Points

262 144

Length

6.77e+02

Dimensions

512, 512, 1

Spacing

9.38e-01, 9.38e-01, 5.00e+00

N Arrays

1

File Info

File Size

527.3 KB

Num Files

1

File Ext

.img

Reader

DICOMReader

Data Source

prostate.img

Whole Body Ct Female Dataset

Downloads ImageData MultiBlock 3D Volume Homogeneous Medical

download_whole_body_ct_female()

Download a CT image of a female subject with 117 segmented anatomic structures.

../../../_images/pyvista-examples-downloads-download_whole_body_ct_female-1_00_00.png

Dataset Info

Data Type

MultiBlock

ImageData

Cell Type

VOXEL

Length

1.06e+03

File Info

File Size

17.7 KB

Num Files

2

File Ext

.py,

.vtm

Reader

XMLMultiBlockDataReader

See also Visualize Anatomical Groups, Whole Body Ct Male Dataset, Volume With Segmentation Mask

Data Source

whole_body_ct/s1380_resampled.zip whole_body_ct/colors.py

Whole Body Ct Male Dataset

Downloads ImageData MultiBlock 3D Volume Homogeneous Medical

download_whole_body_ct_male()

Download a CT image of a male subject with 117 segmented anatomic structures.

../../../_images/pyvista-examples-downloads-download_whole_body_ct_male-1_00_00.png

Dataset Info

Data Type

MultiBlock

ImageData

Cell Type

VOXEL

Length

1.06e+03

File Info

File Size

17.7 KB

Num Files

2

File Ext

.py,

.vtm

Reader

XMLMultiBlockDataReader

See also Visualize Anatomical Groups, Whole Body Ct Female Dataset, Volume With Segmentation Mask

Data Source

whole_body_ct/s1397_resampled.zip whole_body_ct/colors.py

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